[BUG] [BUG] Cloud mode repository picker only shows 4 repos out of 11 accessible repositories

Preflight Checklist

• [x] I have searched existing issues and this hasn't been reported yet
• [x] This is a single bug report (please file separate reports for different bugs)
• [x] I am using the latest version of Claude Code

What's Wrong?

In Claude Code desktop app (Cloud mode), the repository picker only shows 4 repositories, but my GitHub account (liukedi) has 11 accessible repositories.

Visible in picker (4):

• liukedi/LoreCore-AI-notetaker
• Jiananliu12138/DH2643_Cookio_frontend
• Lin-Hi/cookio-backend
• liukedi/weread2notion-pro

Missing from picker (7):

• liukedi/Profile-Figma-2025
• liukedi/englishCV
• liukedi/Personal-Application-Archieve
• liukedi/CV_Kedi
• liukedi/englishCVLatex
• Dandelight/bazi
• liukedi/under18

The 4 visible repos appear to be ones with recent activity. The missing repos include both public and private repositories.

This appears to be the same backend repository indexing issue reported in #27155, #60637, and others.

GitHub username: liukedi
Platform: Claude Code desktop, Cloud mode, Windows

What Should Happen?

All 11 repositories that my GitHub account (liukedi) has access to should appear in the repository picker.

Error Messages/Logs

Steps to Reproduce

1. Open Claude Code desktop app
2. Switch to Cloud mode
3. Click the repository picker dropdown
4. Only 4 repositories are shown instead of all 11

Claude Model

None

Is this a regression?

I don't know

Last Working Version

_No response_

Claude Code Version

Claude Code Desktop App (latest)

Platform

Other

Operating System

Windows

Terminal/Shell

Other

Additional Information

_No response_