[Bug] Claude thinking messages not displaying in output

Bug Description
I can no longer see claude "thinking" messages.

Environment Info

• Platform: darwin
• Terminal: Apple_Terminal
• Version: 2.1.87
• Feedback ID: aa6a77ec-9ffd-4e52-b594-b7aa92825c89

Errors

[{"error":"Error: NON-FATAL: Lock acquisition failed for /Users/brianpotter/.local/share/claude/versions/2.1.87 (expected in multi-process scenarios)\n    at _p_ (/$bunfs/root/src/entrypoints/cli.js:2851:2138)\n    at Vn6 (/$bunfs/root/src/entrypoints/cli.js:2851:1218)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:50:07.000Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:50:07.018Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async W (/$bunfs/root/src/entrypoints/cli.js:5827:10286)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:50:07.498Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async Z (/$bunfs/root/src/entrypoints/cli.js:5827:11056)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:50:07.498Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async W (/$bunfs/root/src/entrypoints/cli.js:5827:10286)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:50:25.245Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async Z (/$bunfs/root/src/entrypoints/cli.js:5827:11056)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:50:25.245Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async W (/$bunfs/root/src/entrypoints/cli.js:5827:10286)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:50:32.218Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async Z (/$bunfs/root/src/entrypoints/cli.js:5827:11056)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:50:32.219Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async W (/$bunfs/root/src/entrypoints/cli.js:5827:10286)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:51:35.775Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async Z (/$bunfs/root/src/entrypoints/cli.js:5827:11056)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:51:35.776Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async W (/$bunfs/root/src/entrypoints/cli.js:5827:10286)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:54:02.556Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async Z (/$bunfs/root/src/entrypoints/cli.js:5827:11056)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:54:02.556Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at VzH (/$bunfs/root/src/entrypoints/cli.js:1820:37430)\n    at async W (/$bunfs/root/src/entrypoints/cli.js:5827:10286)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-03-30T06:54:09.351Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP …

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