[BUG] --dangerously-skip-permissions sometimes still asks for permissions?

Preflight Checklist

• [x] I have searched existing issues and this hasn't been reported yet
• [x] This is a single bug report (please file separate reports for different bugs)
• [x] I am using the latest version of Claude Code

What's Wrong?

I am running (under podman; via https://github.com/con/yolo/blob/main/bin/yolo) claude --dangerously-skip-permissions --name=proj_SENSORED --resume and it claude still asks for some permissions.

I believe it was not like that before I introduced --name into such invocations and updated container's bundled claude to the most recent from whatever I had before.

I found prior similar report

• https://github.com/anthropics/claude-code/issues/1498

which was addressed/closed back then. I reused the title since good descriptor.

Here is an example trimmed a little

❯ CLAUDE_CODE_OAUTH_TOKEN=$(cat ~/SENSORED) yolo -- 'Review https://github.com/...
 ▐▛███▜▌   Claude Code v2.1.81
▝▜█████▛▘  Opus 4.6 (1M context) · Claude API                                                                                                    
  ▘▘ ▝▝    /home/yoh/doc/papers.withothers/202x-yoda-examples

❯ Review https://github.com/...
...
╌╌╌╌╌╌╌
 Do you want to create PR-reply.md?
 ❯ 1. Yes
   2. Yes, allow all edits during this session (shift+tab)
   3. No

 Esc to cancel · Tab to amend

and underlying process:

yoh      1403340  0.0  0.0  18032 12104 pts/40   Ss   Mar21   0:13  |   \_ zsh
yoh      2317019  0.0  0.0   7384  3700 pts/40   S+   Mar22   0:00  |   |   \_ /bin/bash /home/yoh/.local/bin/yolo -- Review https://github.com/...
yoh      2317039  0.3  0.0 1952712 48260 pts/40  Sl+  Mar22   6:20  |   |       \_ podman run --log-driver=none -it --rm --user=SENSORED:SENSORED --userns=keep-id --name=doc_papers.withothers_202x-yoda-examples-2317019 -v /home/yoh/.claude:/home/yoh/.claude:z -v /home/yoh/.gitconfig:/tmp/.gitconfig:ro,z -v /home/yoh/doc/papers.withothers/202x-yoda-examples:/home/yoh/doc/papers.withothers/202x-yoda-examples:z -w /home/yoh/doc/papers.withothers/202x-yoda-examples -e CLAUDE_CONFIG_DIR=/home/yoh/.claude -e GIT_CONFIG_GLOBAL=/tmp/.gitconfig -e CLAUDE_CODE_OAUTH_TOKEN -e CLAUDE_CODE_EXPERIMENTAL_AGENT_TEAMS -v /home/yoh/proj/misc/congo:/home/yoh/proj/misc/congo:Z -v /home/yoh/proj/CON/serve:/home/yoh/proj/CON/serve:ro -v /home/yoh/proj/datalad/trash:/home/yoh/proj/datalad/trash:ro -v /home/yoh/doc/papers.withothers/2026-data-hoarder:/home/yoh/doc/papers.withothers/2026-data-hoarder:Z -v /home/yoh/doc/papers.withothers/202x-yoda-overleaf:/home/yoh/doc/papers.withothers/202x-yoda-overleaf:Z -v /home/yoh/proj/datalad/ci/:/home/yoh/proj/datalad/ci/:ro -v /home/yoh/proj/CON/skills:/home/yoh/proj/CON/skills:Z con-bomination-claude-code claude --dangerously-skip-permissions --name=doc_papers.withothers_202x-yoda-examples-2317019 Review https://github.com/...

What Should Happen?

Should not ask for such permissions due to --dangerously-skip-permissions

Error Messages/Logs

Steps to Reproduce

N/A

Claude Model

Sonnet (default)

Is this a regression?

Yes, this worked in a previous version

Last Working Version

_No response_

Claude Code Version

2.1.81

Platform

Anthropic API

Operating System

Ubuntu/Debian Linux

Terminal/Shell

Other

Additional Information

❯ cat ~/.claude/settings.json
{
  "cleanupPeriodDays": 99999,
  "permissions": {
    "allow": [
      "Bash(cat:*)",
      "Bash(codespellit:*)",
      "Bash(curl:*)",
      "Bash(git grep:*)",
      "Bash(git log:*)",
      "Bash(git ls-tree:*)",
      "Bash(git reflog:*)",
      "Bash(grep:*)",
      "Bash(ls:*)",
      "Bash(shellcheckit:*)",
      "Bash(tox:*)",
      "Bash(wget:*)",
      "Bash(zcat:*)",
      "Bash(zgrep:*)",
      "Fetch(https://github.com/*)",
      "WebFetch(domain:*.readthedocs.io)",
      "WebFetch(domain:pypi.org)",
      "WebFetch(domain:github.com)",
      "WebFetch(domain:raw.githubusercontent.com)"
    ],
    "deny": [
      "Read(./.env)",
      "Read(./.env.*)",
      "Read(*/.*.priv)"
    ]
  },
  "model": "opus[1m]",
  "skipDangerousModePermissionPrompt": true
}

❯ cat ~/.claude/settings.local.json
{
  "permissions": {
    "allow": [
      "Bash(echo:*)",
      "Bash(systemctl --user show-environment:*)",
      "Bash(localectl status:*)",
      "Bash(gsettings get:*)",
      "Bash(test:*)",
      "Bash(journalctl:*)",
      "Bash(top:*)",
      "Bash(ps:*)",
      "Bash(bluetoothctl devices:*)",
      "Bash(bluetoothctl:*)",
      "Bash(swapon:*)",
      "Bash(which gnome-network-displays 2>/dev/null && dpkg -l gnome-network-displays 2>/dev/null | grep ^ii)",
      "Bash(systemctl --user status wpa_supplicant 2>/dev/null; systemctl status wpa_supplicant 2>/dev/null | head -10)",
      "Bash(lsusb 2>&1)",
      "Bash(dmesg | grep -i -E 'usb|snow|blue|mic' | tail -40)",
      "Bash(which uhubctl 2>/dev/null || dpkg -l uhubctl 2>/dev/null || echo \"uhubctl not installed\")"
    ]
  },
  "enableAllProjectMcpServers": false
}