--dangerously-skip-permissions sometimes still asks for permissions?

I'm not filing this as a bug as I'm very unsure about it. It only happens on one of my projects.

I'm running the project in a devcontainer to isolate the dev environment from my system and be able to run with --dangerously-skip-permissionsin a safe way. That worked fine for a while until it suddenly keeps asking for permissions again on certain Tools. Some examples that happen while I type:

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I'm sure i am in "Bypassing Permissions" btw...

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I have even added Search() and List() to my allow patterns in project settings but that doesn't change anything. Weird thing is that it only seems to happen on some tools - mainly Search() and List(). And only on this project - I'm not sure if only this project uses them to that extend, but it's very strange.

I already tried a run outside the devcontainer to see if that's the issue - it's not. Same behaviour.

So again - as it is very project specific i'm not filing this as a bug but maybe someone reading this has an idea.