[BUG] have access to two MCPbuiltin tools only despite ~/.claude.json

Environment

• Platform (select one):
• [ ] Anthropic API
• [ ] AWS Bedrock
• [ ] Google Vertex AI
• [ ] Other: <!-- specify -->
• Claude CLI version: claude --version

1.0.30 (Claude Code)

• Operating System: MacOS 15.5
• Terminal: <!-- e.g. iTerm2, Terminal App -->

Bug Description

You're right. Looking at my available tools, I can see that I have access to two MCP tools:

1. mcp__ide__getDiagnostics - Get language diagnostics from VS Code
2. mcp__ide__executeCode - Execute python code in the Jupyter kernel

However, I don't see any tools specifically labeled as "GondolaBusiness MCP server". The MCP tools I have appear to be related to the IDE
integration rather than a business-specific MCP server.

Tools are setup in ~/.claude.json

Steps to Reproduce

1. Ask Claude what <MCP tools it can see

Expected Behavior

<!-- What you expected to happen -->

Actual Behavior

<!-- What actually happened -->

Additional Context

<!-- Add any other context about the problem here, such as screenshots, logs, etc. -->