[Bug] User skills and agents not loaded after update to v2.1.25

Bug Description
after update to 2.1.25, user skills and agents are no longer loaded

Environment Info

• Platform: linux
• Terminal: vscode
• Version: 2.1.25
• Feedback ID: 59b8cecb-8db3-4c84-8c39-f189081335cc

Errors

[{"error":"Error: ENOENT: no such file or directory, scandir '/etc/claude-code/.claude/skills'\n    at readdirSync (unknown)\n    at <anonymous> (/$bunfs/root/claude:12:2063)\n    at iO (/$bunfs/root/claude:11:35715)\n    at readdirSync (/$bunfs/root/claude:12:2024)\n    at LZR (/$bunfs/root/claude:1781:380)\n    at LZR (/$bunfs/root/claude:1781:1350)\n    at <anonymous> (/$bunfs/root/claude:1781:4670)\n    at <anonymous> (/$bunfs/root/claude:1781:5401)\n    at A (/$bunfs/root/claude:11:7259)\n    at of8 (/$bunfs/root/claude:4791:4342)","timestamp":"2026-01-30T06:05:11.325Z"},{"error":"Error: NON-FATAL: Lock acquisition failed for /home/ubuntu/.local/share/claude/versions/2.1.25 (expected in multi-process scenarios)\n    at fLR (/$bunfs/root/claude:3938:2098)\n    at CSA (/$bunfs/root/claude:3938:1209)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-01-30T06:05:11.362Z"},{"error":"AbortError: The operation was aborted.\n    at unknown\n    at abortChildProcess (node:child_process:937:42)\n    at onAbortListener2 (node:child_process:35:24)\n    at abort (unknown)\n    at <anonymous> (/$bunfs/root/claude:2998:209)","timestamp":"2026-01-30T06:05:12.934Z"},{"error":"RipgrepTimeoutError: Ripgrep search timed out after 20 seconds. The search may have matched files but did not complete in time. Try searching a more specific path or pattern.\n    at _ (/$bunfs/root/claude:74:189)\n    at <anonymous> (/$bunfs/root/claude:74:403)\n    at exitHandler (node:child_process:109:27)\n    at errorHandler (node:child_process:118:16)\n    at emitError (node:events:43:23)\n    at abortChildProcess (node:child_process:937:17)\n    at onAbortListener2 (node:child_process:35:24)\n    at abort (unknown)\n    at <anonymous> (/$bunfs/root/claude:2998:209)","timestamp":"2026-01-30T06:05:12.935Z"},{"error":"Error: 1: Command failed with ERR_STREAM_PREMATURE_CLOSE: code --force --install-extension anthropic.claude-code\nPremature close \n    at MvH (/$bunfs/root/claude:1580:4029)\n    at async jvH (/$bunfs/root/claude:1580:1623)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-01-30T06:05:13.631Z"}]