[BUG] claude generates empty setting files without asking

Preflight Checklist

• [x] I have searched existing issues and this hasn't been reported yet
• [x] This is a single bug report (please file separate reports for different bugs)
• [x] I am using the latest version of Claude Code

What's Wrong?

When I ask Claude code to execute something, it automatically generates several setting empty files like .bashrc. This behavior happens even if I disable auto edit.

Here is file names claude code generates:

• .bash_profile
• .bashrc
• .gitconfig
• .mcp.json
• .profile
• .ripgreprc
• .zprofile
• .zshrc

What Should Happen?

It should not generate empty files without asking

Error Messages/Logs

Steps to Reproduce

1. launch claude code
2. ask something (e.g. /init or general prompt like "please write a code to do something")
3. after the execution, empty setting files appear

Claude Model

Opus

Is this a regression?

Yes, this worked in a previous version

Last Working Version

_No response_

Claude Code Version

2.1.19 (Claude Code)

Platform

Anthropic API

Operating System

Ubuntu/Debian Linux

Terminal/Shell

IntelliJ IDEA terminal

Additional Information

_No response_