[BUG] Can't remove MCP Server

Preflight Checklist

• [x] I have searched existing issues and this hasn't been reported yet
• [x] This is a single bug report (please file separate reports for different bugs)
• [x] I am using the latest version of Claude Code

What's Wrong?

I added several MCP servers to our project via .mcp.json. Now, I'm trying to remove one, but removing from .mcp.json does not remove it. claude mcp remove returns "No MCP server found with name: <server name> in .mcp.json". Specifying scope does not help (I've tried all scopes).

What Should Happen?

You should be able to remove MCP servers added via .mcp.json.

Error Messages/Logs

Steps to Reproduce

1. Add an MCP server to .mcp.json
2. Try to remove it.

Claude Model

None

Is this a regression?

I don't know

Last Working Version

_No response_

Claude Code Version

2.1.15

Platform

Anthropic API

Operating System

macOS

Terminal/Shell

Other

Additional Information

_No response_