[Bug] Claude Code: Ignores Specified Instructions in Configuration File

Bug Description
Claude consinstently ignores instructions in the Claude.md file

Environment Info

• Platform: darwin
• Terminal: pycharm
• Version: 1.0.102
• Feedback ID:

Errors

[{"error":"Error: Failed to install Claude CLI package: npm error code ENOTEMPTY\nnpm error syscall rename\nnpm error path /Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code\nnpm error dest /Users/wrede/.claude/local/node_modules/@anthropic-ai/.claude-code-xia3mLSE\nnpm error errno -66\nnpm error ENOTEMPTY: directory not empty, rename '/Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code' -> '/Users/wrede/.claude/local/node_modules/@anthropic-ai/.claude-code-xia3mLSE'\nnpm error A complete log of this run can be found in: /Users/wrede/.npm/_logs/2025-09-04T00_03_56_876Z-debug-0.log\n    at Nu (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:776:576)\n    at process.processTicksAndRejections (node:internal/process/task_queues:105:5)\n    at async Object.current (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:3572:11985)","timestamp":"2025-09-04T00:03:57.007Z"},{"error":"Error: EISDIR: illegal operation on a directory, read\n    at Module.readFileSync (node:fs:443:20)\n    at Object.readFileSync (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:677:6735)\n    at ZKA (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:746:8665)\n    at Object.call (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:1752:936)\n    at call.next (<anonymous>)\n    at xO5 (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:3555:11273)\n    at process.processTicksAndRejections (node:internal/process/task_queues:105:5)\n    at async EdB (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:3555:7472)\n    at async f1B (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:1757:3411)\n    at async y9B (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:1935:983)","timestamp":"2025-09-04T08:35:37.078Z"},{"error":"AxiosError: Request failed with status code 403\n    at nq (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:673:1077)\n    at Unzip.G0 (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:674:9955)\n    at Unzip.emit (node:events:519:35)\n    at Unzip.emit (node:domain:489:12)\n    at endReadableNT (node:internal/streams/readable:1696:12)\n    at process.processTicksAndRejections (node:internal/process/task_queues:90:21)\n    at g21.request (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:676:2088)\n    at process.processTicksAndRejections (node:internal/process/task_queues:105:5)\n    at async hV5 (file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:2429:472)\n    at async Promise.all (index 0)\n    at async file:///Users/wrede/.claude/local/node_modules/@anthropic-ai/claude-code/cli.js:2415:9205","timestamp":"2025-09-04T14:55:07.501Z"}]