[Feature Request] Allow runtime preference customization for rejected commands in auto mode

Bug Description
I should be able to adapt auto into my prefs while running for the rejected commands

Environment Info

• Platform: darwin
• Terminal: iTerm.app
• Version: 2.1.114
• Feedback ID: 70d15f3e-c67e-4dc0-b4ba-045862d707b2

Errors

[{"error":"Error: Request was aborted.\n    at makeRequest (/$bunfs/root/src/entrypoints/cli.js:50:3448)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-18T05:04:50.452Z"},{"error":"McpError: MCP error -32001: user-cancel\n    at D (/$bunfs/root/src/entrypoints/cli.js:93:55308)\n    at <anonymous> (/$bunfs/root/src/entrypoints/cli.js:93:55566)\n    at abort (unknown)\n    at $q1 (/$bunfs/root/src/entrypoints/cli.js:814:3782)\n    at abort (unknown)\n    at $q1 (/$bunfs/root/src/entrypoints/cli.js:814:3782)\n    at abort (unknown)\n    at u2H (/$bunfs/root/src/entrypoints/cli.js:8398:7562)\n    at <anonymous> (/$bunfs/root/src/entrypoints/cli.js:8360:4675)\n    at <anonymous> (/$bunfs/root/src/entrypoints/cli.js:621:9149)","timestamp":"2026-04-18T11:04:39.221Z"},{"error":"Error: Request was aborted.\n    at makeRequest (/$bunfs/root/src/entrypoints/cli.js:50:3448)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-18T11:04:41.240Z"},{"error":"Error: File does not exist. Note: your current working directory is /Users/sadiuysal/Documents/GitHub/github-linear-agent-orchestrator.\n    at call (/$bunfs/root/src/entrypoints/cli.js:4732:7630)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-18T11:05:32.266Z"}]