[Bug] Project synchronization blocks prompt submission indefinitely

Bug Description
prompts on ClaudeAI are blocked (only in my project) while Github project is synchronizing (after 14 hours).The button is greyed out and displaying "syncing knowledge...". Link: https://claude.ai/project/019c77ec-d567-76c8-b0d5-307877df0d46

Environment Info

• Platform: win32
• Terminal: windows-terminal
• Version: 2.1.34
• Feedback ID: d873f619-c151-44d1-8b30-6f33e3d1d8cc

Errors

[{"error":"Error: 429 {\"type\":\"error\",\"error\":{\"type\":\"rate_limit_error\",\"message\":\"This request would exceed your account's rate limit. Please try again later.\"},\"request_id\":\"req_011CZbchj5C8KuQ4qAxGf8bR\"}\n    at Z4.generate (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:359:8998)\n    at LC.makeStatusError (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:376:2195)\n    at LC.makeRequest (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:376:5420)\n    at process.processTicksAndRejections (node:internal/process/task_queues:104:5)","timestamp":"2026-03-31T18:17:00.446Z"},{"error":"Error: EPERM: operation not permitted, symlink 'C:\\Users\\artio\\.claude\\projects\\C--projects-kiasu-mercatus\\98fabb6f-f165-4e59-82c1-e9e066ebbdf7\\subagents\\agent-a11b365.jsonl' -> 'C:\\Users\\artio\\AppData\\Local\\Temp\\claude\\C--projects-kiasu-mercatus\\tasks\\a11b365.output'\n    at symlinkSync (node:fs:1868:11)\n    at SD1 (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:1372:1226)\n    at fU7 (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:1484:1520)\n    at file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:2099:961\n    at AsyncLocalStorage.run (node:internal/async_local_storage/async_context_frame:63:14)\n    at g01 (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:1221:141)\n    at Object.call (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:2099:660)\n    at process.processTicksAndRejections (node:internal/process/task_queues:104:5)\n    at async QQY (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:3527:13988)","timestamp":"2026-03-31T18:19:01.441Z"},{"error":"Error: Request was aborted.\n    at oY6 (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:886:99534)\n    at oY6.next (<anonymous>)\n    at qHq (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:5755:4407)\n    at qHq.next (<anonymous>)\n    at YHq (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:5760:7371)\n    at process.processTicksAndRejections (node:internal/process/task_queues:104:5)\n    at async file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:5755:3887\n    at async MHA (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:936:2007)\n    at async mW1 (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:5755:3857)\n    at async EZ (file:///C:/Users/artio/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:3529:8938)","timestamp":"2026-03-31T18:54:39.531Z"},{"error":"Error: ensureToolResultPairing: repaired missing tool_result blocks (29 -> 29 messages). Message structure: [0] user; [1] assistant(id=msg_01Kq7Mbvb5es24B3Rgz3iKf8, tool_uses=[toolu_01RegKMcsiQVvNhN7kHgnPhE,toolu_01VokBSArKi23iAf6VarwN4M,toolu_01BXj5pUMHmvmJz6v4mfSNYb,toolu_0131VoTwzXef8w73FjVKPoVd]); [2] user(tool_results=[toolu_01RegKMcsiQVvNhN7kHgnPhE,toolu_01VokBSArKi23iAf6VarwN4M,toolu_01BXj5pUMHmvmJz6v4mfSNYb,toolu_0131VoTwzXef8w73FjVKPoVd]); [3] assistant(id=msg_016kpbh14BQ4vijYFWfyjDGB, tool_uses=[toolu_012XQVHahuWDfpoKhgA3Q7zU,toolu_01E25GKdo6aueJeP4juhttgF]); [4] user(tool_results=[toolu_012XQVHahuWDfpoKhgA3Q7zU,toolu_01E25GKdo6aueJeP4juhttgF]); [5] assistant(id=msg_01Q6Y8H8ub3vJthpxcityTdh, tool_uses=[toolu_017Drw1Ey21dpAEnLqkhrcQh]); [6] user(tool_results=[toolu_017Drw1Ey21dpAEnLqkhrcQh]); [7] assistant(id=msg_01SXV9CtvMCdRAwCu4UNSP8i, tool_uses=[toolu_015W6uBD9L6ZVjX1AT1qwcB2,toolu_01785cofvzR35rYyrJiy8S17,toolu_01Ccj9NDWuPTW3NX6VujQYzX]); [8] user(tool_results=[toolu_015W6uBD9L6ZVjX1AT1qwcB2,toolu_01785cofvzR35rYyrJiy8S17,toolu_01Ccj9NDWuPTW3NX6VujQYzX]); [9] assistant(id=msg_018csC1nbBqftpcooZjHziDa, tool_uses=[]); [10] user; [11] assistant(id=msg_01M5P29aeByjG37tbG9aYmSb, tool_uses=[toolu_01LFotsfEmrTuU7Po9UhoF77,toolu_01RR4MZdyyrGBkJqCm7U1fK9,toolu_01MAHpw2zDzcGkMmZkMhxvEw,toolu_014tBa77NbcHLyfZA2RpmvBn,toolu_01R2GZuQHJp5f3g85LNPG3iV,toolu_01R2LNbE7CJanrZxTDkexe1s]); [12] user(tool_results=[toolu_01LFotsfEmrTuU7Po9UhoF77,toolu_01RR4MZdyyrGBkJqCm7U1fK9,toolu_01MAHpw2zDzcGkMmZkMhxvEw,toolu_014tBa77NbcHLyfZA2RpmvBn,toolu_01R2GZuQHJp5f3g85LNPG3iV,toolu_01R2LNbE7CJanrZxTDkexe1s]); [13] assistant(id=msg_01Wst16eTxuPEnBWvTnZsLb2, tool_uses=[toolu_01A8RQTNHoyE1LVfcWuQnDHJ]); [14] user(tool_results=[toolu_01A8RQTNHoyE1LVfcWuQnDHJ]); [15] assistant(id=msg_014J…

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