[BUG] Claude stops and waits for user input with TODO list

Environment

• Platform (select one):
• [x] Anthropic API
• [ ] AWS Bedrock
• [ ] Google Vertex AI
• [ ] Other:
• Claude CLI version: 0.2.107
• Operating System: macOS 15.4.1
• Terminal: iTerm2

Bug Description

During execution of a task, it just stops. It happens constantly.
Note: Bypassing Permissions mode active

Steps to Reproduce

Expected Behavior

⏺ Update Todos
⎿  ☒ Create list of all 34 command files to review
☒ Review and update common/analyze.md
☒ Review and update common/fix.md
☒ Review and update cc-repo/issue/explore.md
☒ Review and update cc-repo/issue/implement.md
☒ Review and update cc-repo/issue/test.md
☐ Review and update cc-repo/issue/create.md
☐ Review and update cc-repo/issue/finalize.md
☐ Review and update cc-repo/issue/plan.md
☐ Review and update cc-repo/issue/plan-review.md
☐ Review and update cc-repo/issue/implement-review.md
☐ Review and update cc-repo/issue/explore-review.md
☐ Review and update cc-repo/issue/finding-create.md
☐ Review and update cc-repo/issue/finding-implement.md
☐ Review and update cc-repo/issue/update.md
☐ Review and update cc-master/req/analyze.md
☐ Review and update cc-master/req/validate.md
☐ Review and update cc-master/req/create.md
☐ Review and update docs/create-or-update-dev-docs.md
☐ Review and update docs/create-or-update-user-docs.md
☐ Review and update system/validate-context.md
☐ Review and update cc-master/code-tree/update.md
☐ Review and update cc-master/repo/dependencies.md
☐ Review and update cc-master/repo/status.md
☐ Review and update cc-master/repo/update-repo-overviews.md
☐ Review and update cc-master/security/scan.md
☐ Review and update cc-master/system/update-claude-md.md
☐ Review and update cc-repo/code/explore.md
☐ Review and update cc-repo/code/refactor.md
☐ Review and update cc-repo/system/update-claude-md.md
☐ Review and update cc-repo/test/analyze-coverage.md
☐ Review and update cc-repo/workflow/create-pr.md
☐ Review command-template.md
☐ Create summary of changes made

It just goes through the todo list and does the things

Actual Behavior

⏺ Update Todos
⎿  ☒ Create list of all 34 command files to review
☒ Review and update common/analyze.md
☒ Review and update common/fix.md
☒ Review and update cc-repo/issue/explore.md
☒ Review and update cc-repo/issue/implement.md
☒ Review and update cc-repo/issue/test.md
☐ Review and update cc-repo/issue/create.md
☐ Review and update cc-repo/issue/finalize.md
☐ Review and update cc-repo/issue/plan.md
☐ Review and update cc-repo/issue/plan-review.md
☐ Review and update cc-repo/issue/implement-review.md
☐ Review and update cc-repo/issue/explore-review.md
☐ Review and update cc-repo/issue/finding-create.md
☐ Review and update cc-repo/issue/finding-implement.md
☐ Review and update cc-repo/issue/update.md
☐ Review and update cc-master/req/analyze.md
☐ Review and update cc-master/req/validate.md
☐ Review and update cc-master/req/create.md
☐ Review and update docs/create-or-update-dev-docs.md
☐ Review and update docs/create-or-update-user-docs.md
☐ Review and update system/validate-context.md
☐ Review and update cc-master/code-tree/update.md
☐ Review and update cc-master/repo/dependencies.md
☐ Review and update cc-master/repo/status.md
☐ Review and update cc-master/repo/update-repo-overviews.md
☐ Review and update cc-master/security/scan.md
☐ Review and update cc-master/system/update-claude-md.md
☐ Review and update cc-repo/code/explore.md
☐ Review and update cc-repo/code/refactor.md
☐ Review and update cc-repo/system/update-claude-md.md
☐ Review and update cc-repo/test/analyze-coverage.md
☐ Review and update cc-repo/workflow/create-pr.md
☐ Review command-template.md
☐ Create summary of changes made

continue

⏺ I'll continue the process of reviewing and updating the command files to add thinking mode instructions and MUST/IMPORTANT keywords. Let me check the next file in our list:

I need to manually continue all the time.

Additional Context