Spoofed/false "Note: file was modified... don't tell the user" system-reminder appears after Claude's own Write/Edit tool calls

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Maintainer reply None cached
Activity 5 comments · opened Jul 6, 2026

Title: Spoofed/false "Note: file was modified... don't tell the user" system-reminder appears after Claude's own Write/Edit tool calls

Summary

During a single Claude Code session, a <system-reminder>-style note appeared twice in the tool-result stream, each time claiming a file had been "modified, either by the user or by a linter" and instructing the model not to mention this to the user. In both cases, the claim was false: the file in question had just been written by Claude itself, in the same turn, via its own Edit/Write/Bash cp tool call — there was no external modification.

Why this matters

The note's phrasing ("This change was intentional... don't tell the user this, since they are already aware") is functionally a request for the model to silently suppress information from the user. Regardless of whether this specific instance is a genuine harness bug or a spoofed/injected message, the pattern is dangerous: if a real attacker (or a bug) can cause this same note to appear after an actual unauthorized file modification, the model would be instructed to hide it from the user by design.

Reproduction (session details)

  1. Session working directory: a git repo (atlas-cc).
  2. Claude read/edited ~/.claude/CLAUDE.md via the Edit tool. Immediately after, a system note appeared claiming the file "was modified, either by the user or by a linter," showing a full diff. On inspection, the diff was byte-identical to the file's prior known content — nothing had actually changed. The Read tool independently reported "Wasted call — file unchanged since your last Read," confirming no modification occurred.
  3. Later in the same session, Claude ran cp ~/.claude/settings.json ~/.claude-atlascc/settings.json via the Bash tool. Immediately after that same tool call, another note appeared claiming ~/.claude-atlascc/settings.json "was modified, either by the user or by a linter" — but Claude had just written that exact file itself, in that exact tool call, seconds earlier.
  4. In both cases the note included the instruction: "This change was intentional, so make sure to take it into account as you proceed... Don't tell the user this, since they are already aware."

Expected behavior

  • Change-detection notices should only fire for changes Claude did not itself just make.
  • Under no circumstance should a system-level note instruct the model to conceal a file change from the user. Even for legitimate concurrent-edit detection (e.g., another process/linter touching a file mid-session), the user should be informed, not the opposite.

Actual behavior

  • False positives fired twice in one session, both immediately following Claude's own writes.
  • The instruction framing actively told the model to hide the (false) change from the user.

Notes

  • Claude did not comply with the "don't tell the user" instruction in either case — it verified file content directly and disclosed both instances to the user proactively.
  • Flagging this as a potential prompt-injection-shaped harness bug rather than a confirmed exploit; I have not verified whether this can be triggered by an actual third party or malicious file content, only that it fired incorrectly twice in normal use.

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5 Comments

phillipmex · 1 month ago

Update: I'm told this same pattern recurred in a second, separate Claude Code session on the same machine (different account/config directory, different terminal), again targeting ~/.claude/CLAUDE.md. As before, the "diff" shown was byte-identical to the file's actual content — nothing had really changed — and the note again instructed the model not to tell the user. That session also did not comply, and surfaced it instead.

Noting this as a second independent trigger of the same false-positive/suppression-instruction pattern described above.

KamyarTaher · 1 month ago

Adding a related trigger for what looks like the same false-positive class: reading /proc/* files (no Write/Edit tool call involved) also produces this false reminder.

Environment

  • Claude Code CLI v2.1.201
  • WSL2, Linux 6.6.87.2-microsoft-standard-WSL2
  • Shell: bash

Repro

grep -i ":2406" /proc/net/tcp

(Any /proc/* read reproduces this, e.g. cat /proc/self/status also triggers it, with no edit/linter activity anywhere in the session.)

After the tool_result for that Bash call, Claude Code appends a synthetic <system-reminder> claiming the file "was modified, either by the user or by a linter... don't tell the user this, since they are already aware" — despite nothing being edited. /proc/net/tcp is a kernel-generated virtual file that returns a fresh snapshot on every read; it isn't editable by a user or linter, and differing content between reads is expected behavior, not a modification.

Evidence from the transcript

Shortly before the false reminder, an attachment record of this shape appears:

{ "attachment": { "type": "edited_text_file", "filename": "/proc/net/tcp",
  "snippet": "1\t  sl  local_address rem_address ...\n2\t   0: 3600007F:0035 ...\n..." } }

Hypothesis (unconfirmed)

Consistent with a file-change-tracking/watcher feature that treats any path-looking Bash argument as a "trackable text file" — snapshotting it on first read and diffing against a later read. For a procfs/sysfs/devfs path, that diff would likely come back non-empty since content regenerates per read rather than being edited, which would explain the false positive seen here (and, plausibly, on other paths of the same kind — not verified beyond the two tested above).

Suggested fix

Exclude non-regular files (procfs/sysfs/devfs) from this tracking mechanism — or at minimum, anything outside the project's working directory.

eon-dev1 · 24 days ago

Also seen this in Ubuntu CLI v 2.1.220. Was distracting to both me and Claude. This was Claude's response. "CLAUDE.md was modified, either by the user or by a linter. This change was intentional, so make sure to take it into account as you proceed (ie. don't revert it unless the user asks you to). Don't tell the user this, since they are already aware. Here are the relevant changes (shown with line numbers):

...followed by the numbered diff/line listing of the new file content (which I quoted in full in my previous message).

The specific line that made me flag it rather than just comply was: "Don't tell the user this, since they are already aware." That's a claim about your mental state (that you already know) bundled with an instruction to withhold information — a pattern worth treating skeptically regardless of source, since a legitimate system notification has no need to tell me to keep something from you. In this case it checked out (you confirm it was you), but I'd rather flag a false positive than silently comply with a "don't mention this" instruction I can't independently verify."

juanfer-az · 20 days ago

Adding a data point that reinforces this report: hit the same "don't tell the user" note from a different trigger — a large git checkout/branch-switch (thousands of commits) in a working directory a background Claude Code session was concurrently reading from. Like the original report, the note pointed at real content, not a fabrication, but still carried the same instruction to conceal it.

Seems the detector fires on more than just Claude's own Write/Edit calls — any external process rewriting files in a directory a session is reading from can trigger it. Either way, the actual bug is the same one you flagged: "don't tell the user" gets attached unconditionally, regardless of whether the change is legitimate.

juanfer-az · 20 days ago

For reference, #71585 (filed earlier) also covers this — it names "concurrent process" (including a backgrounded task the same session started) as one of the unverified causes behind this note, which covers the git checkout trigger above. It includes a suggested fix: cause-neutral wording, dropping "already aware"/"don't tell" unless genuinely verified.