[Bug] Permissions Configuration Not Respected in Session Management

Bug Description
Permissions given in the settings.json or settings.local.json files are not being honored. Even if I grant read permission to the session, the console keeps asking for the same permission over and over again. This also happens with other commands and write commands.

Environment Info

• Platform: win32
• Terminal: mintty
• Version: 1.0.103
• Feedback ID: 99a3d76e-29a0-4688-8cbc-e0913d048e8c

Errors

[{"error":"Error: Invalid settings\n    at BW9 (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:30092)\n    at PVA (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:30814)\n    at GW9 (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:32619)\n    at ay (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:33003)\n    at P2 (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:32935)\n    at r9B (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:1973:5697)\n    at file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:1984:291\n    at Q (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:671:13288)\n    at qj5 (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:3647:1039)\n    at file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:3687:1450","timestamp":"2025-09-04T02:47:06.683Z"},{"error":"Error: Invalid settings\n    at BW9 (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:30092)\n    at PVA (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:30814)\n    at LG (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:31586)\n    at An (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:728:1521)\n    at nz1 (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:728:1484)\n    at Ey2 (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:878:16588)\n    at fP0.<anonymous> (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:3657:144)\n    at fP0.B [as _actionHandler] (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:661:528)\n    at file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:665:3127\n    at fP0._chainOrCall (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:665:1694)","timestamp":"2025-09-04T02:47:06.926Z"},{"error":"Error: Invalid settings\n    at BW9 (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:30092)\n    at PVA (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:30814)\n    at LG (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:31586)\n    at SpB (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:3606:2943)\n    at kpB (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:3606:3826)\n    at fD (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:330:19415)\n    at _c (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:332:42814)\n    at J9 (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:332:38355)\n    at ab (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:332:38283)\n    at aD (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:332:38137)","timestamp":"2025-09-04T02:47:07.914Z"},{"error":"Error: Invalid settings\n    at BW9 (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:30092)\n    at PVA (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:30814)\n    at LG (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:742:31586)\n    at An (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:728:1521)\n    at jpB (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:3606:3247)\n    at kpB (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:3606:3847)\n    at fD (file:///C:/Users/luizr/AppData/Roaming/npm/node_modules/@anthropic-ai/claude-code/cli.js:330:19415)\n    at _c (file:///C:/Users/luizr/AppD

Note: Error logs were truncated.