[Bug] System rules not applied during code generation or tool execution

Bug Description
System systematically ignores it's own clear rules. No matter where the rule set - claude.md, memory or in the prompt.

Environment Info

• Platform: linux
• Terminal: windows-terminal
• Version: 2.1.121
• Feedback ID: 86a80005-e328-4f8e-8426-d813524af2ab

Errors

[{"error":"MaxFileReadTokenExceededError: File content (28538 tokens) exceeds maximum allowed tokens (25000). Use offset and limit parameters to read specific portions of the file, or search for specific content instead of reading the whole file.\n    at ux7 (/$bunfs/root/src/entrypoints/cli.js:4852:12789)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-29T00:42:09.566Z"}]