[Bug] Auto mode denies recursive directory deletion despite allowlist in settings.json

Bug Description
auto mode denies rm -rf .next folder -- even though it is allowed in the settings.json

Environment Info

• Platform: darwin
• Terminal: iTerm.app
• Version: 2.1.117
• Feedback ID: 972befc8-efbf-4f7f-a17b-8f9e984d85cc

Errors

[{"error":"Error: NON-FATAL: Lock acquisition failed for /Users/dennis/.local/share/claude/versions/2.1.117 (expected in multi-process scenarios)\n    at fn_ (/$bunfs/root/src/entrypoints/cli.js:2754:2177)\n    at H98 (/$bunfs/root/src/entrypoints/cli.js:2754:1257)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:53.285Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at aJH (/$bunfs/root/src/entrypoints/cli.js:2754:30499)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:53.314Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at aJH (/$bunfs/root/src/entrypoints/cli.js:2754:30499)\n    at async L (/$bunfs/root/src/entrypoints/cli.js:6151:11827)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:53.887Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at aJH (/$bunfs/root/src/entrypoints/cli.js:2754:30499)\n    at async G (/$bunfs/root/src/entrypoints/cli.js:6151:11021)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:53.887Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at aJH (/$bunfs/root/src/entrypoints/cli.js:2754:30499)\n    at async L (/$bunfs/root/src/entrypoints/cli.js:6151:11827)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:54.079Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n    at aJH (/$bunfs/root/src/entrypoints/cli.js:2754:30499)\n    at async G (/$bunfs/root/src/entrypoints/cli.js:6151:11021)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:54.105Z"},{"error":"Error: 429 {\"type\":\"error\",\"error\":{\"type\":\"rate_limit_error\",\"message\":\"This request would exceed your account's rate limit. Please try again later.\"},\"request_id\":\"req_011CaK8G2DFGRr1Ry77p9ZLR\"}\n    at generate (/$bunfs/root/src/entrypoints/cli.js:11:54524)\n    at makeRequest (/$bunfs/root/src/entrypoints/cli.js:50:4943)\n    at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:29:00.527Z"}]