[Bug] Commands, agents, and skills not detected from ~/.claude after upgrade from 2.0.37

Bug Description
the commands, agents and skills are not detected from ~/.claude after the claude-code upgraded. it works in 2.0.37

Environment Info

• Platform: darwin
• Terminal: cursor
• Version: 2.0.45
• Feedback ID: 53629a8f-1a80-4b9e-afc0-e2ed5efa1818

Errors

[{"error":"Error: NON-FATAL: Lock acquisition failed for /Users/paul/.local/share/claude/versions/2.0.45 (expected in multi-process scenarios)\n    at uq0 (/$bunfs/root/claude:2532:1516)\n    at V4A (/$bunfs/root/claude:2530:12601)\n    at async np8 (/$bunfs/root/claude:2530:13807)\n    at async Ux (/$bunfs/root/claude:2532:236)\n    at async <anonymous> (/$bunfs/root/claude:2532:12383)\n    at processTicksAndRejections (native:7:39)","timestamp":"2025-11-18T23:34:28.184Z"},{"error":"Error: NON-FATAL: Lock acquisition failed for /Users/paul/.local/share/claude/versions/2.0.45 (expected in multi-process scenarios)\n    at uq0 (/$bunfs/root/claude:2532:1516)\n    at V4A (/$bunfs/root/claude:2530:12601)\n    at async np8 (/$bunfs/root/claude:2530:13807)\n    at async Ux (/$bunfs/root/claude:2532:236)\n    at async <anonymous> (/$bunfs/root/claude:2532:12383)\n    at processTicksAndRejections (native:7:39)","timestamp":"2025-11-18T23:34:35.486Z"}]